This page contains the genomic and sample metadata of the Pf8 release, in addition to derived data generated from these.
There are links to CRAM, GVCF and VCF files for the 33,325 samples in the Pf8 release, as well as accompanying index files for these file types. Genotype information for all samples can be found in zipped ZARR format. Supporting files for genetic variant calling (reference genome and annotation files) can also be accessed here. This page also includes files supporting or resulting from analyses contained in the Pf8 manuscript, for example: sample metadata, Fws scores, CNV calls, genetic distance matrices, and inferred drug resistance results. Files can be downloaded direct from the links, or can also be downloaded as part of a script, e.g. by using a command such as wget https://pf8-release.cog.sanger.ac.uk/metadata/Pf8_samples.txt.
If using this data, please cite the Pf8 manuscript [link to manuscript to follow]. More details on the Pf8 data resource can be found at [link to resource page to follow]
For specific descriptions of each of the file types available here, please refer to the README.txt file.
These data are available open access under the terms of the Creative Commons Attribution 4.0 International license (CC-BY 4.0).
Publications using these data should acknowledge and cite the source of the data.
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